De Novo Transcriptome Analysis of Arachis Hypogaea L. (SRR1212866)
Sagar S. Patel1
Dipti B. Shah1
Hetalkumar J. Panchal2
1. G. H. Patel Post Graduate Department of Computer Science and Technology, Sardar Patel University, Vallabh Vidyanagar, Gujarat-388120, India
2. Gujarat Agricultural Biotechnology Institute, Navsari Agricultural University, Surat, Gujarat- 395007, India
OMICS Research, 2015, Vol. 5, No. 1 doi: 10.5376/omics.2015.05.0001
Received: 23 Mar., 2015 Accepted: 03 Apr., 2015 Published: 10 Apr., 2015
© 2015 BioPublisher Publishing Platform
This is an open access article published under the terms of the Creative Commons Attribution License
, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Preferred citation for this article:
Patel et al., 2015, De Novo Transcriptome Analysis of Arachis Hypogaea L. (SRR1212866), OMICS Research, Vol.5, No.1 1-6 (doi: 10.5376/omics.2015.05.0001)
Arachis hypogaea L. (The peanut) is an important oilseed crop in tropical and subtropical regions of the world. Recently, next-generation sequencing technology, termed RNA-seq, has provided a powerful approach for analysing the Transcriptome. This study is focus on RNA-seq of Arachis hypogaea L. (The peanut) of SRR1212866 from NCBI database for de novo Transcriptome analysis. A total of 7.3 million single reads were generated with N50 of 448 bp. Sequence assembly contained total 10824 contigs which is further search with known proteins, a total of 4719 genes were identified. Among these, only 568 unigenes were annotated with 10471 gene ontology (GO) functional categories and sequences mapped to 109 pathways by searching against the Kyoto Encyclopedia of Genes and Genomes pathway database (KEGG). These data will be useful for gene discovery and functional studies and the large number of transcripts reported in the current study will serve as a valuable genetic resource of the Arachis hypogaea L. (The peanut).
Transcriptome; Bioinformatics; Arachis hypogaea L.